Mixsiar Gui User Manual Version 1.0

Run the GUI version of MixSIAR

A graphical user interface (GUI) for MixSIAR, creating Bayesian mixing models in R - brianstock/MixSIAR. APECSgui Installation Guide and User Manual Version 1.0 March 31, 2012 1. Introduction APECSgui is a graphical user interface for using advanced signal processing, machine learning and statistical methods to create EEG-based models of cognitive states. @@ -0,0 +1,87 @@ # Brian Stock # March 8, 2016 # Script file to run isopod example without GUI # Cladocera example (22 fatty acids, run each consumer individually as fixed effect) # The Cladocera Example is from Galloway et al. (2014) and demonstrates MixSIAR applied # to a 22-dimensional fatty acid dataset. Here the 14 mixture datapoints are Cladocera (wa-# ter flea).

mixsiar_gui creates the GUI version of MixSIAR.

Mixsiar Gui User Manual Version 1.0 2

If you use MixSIAR results in publications, please cite the MixSIAR manual as (similar to how you cite R): B. Semmens (2016). MixSIAR GUI User Manual. MixSIAR GUI is a graphical user interface (GUI) that allows you to analyze stable isotope data using the MixSIAR model framework. MixSIAR is a Bayesian mixing model that uses stable isotope data to estimate the proportions of source (prey) contributions to a.

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Usage

DTIC ADA372392: Zeus - A GUI-Based Flowfield Analysis Tool, Version 1.0, User's Manual Item Preview remove-circle. DTIC ADA372392: Zeus - A GUI-Based Flowfield Analysis Tool, Version 1.0, User's Manual by Defense Technical Information Center. Publication date 1999-02-01.

Details

Before running this function, a new user will need to install JAGSand GTK+. See Section 2 of the manual for install instructions:https://github.com/brianstock/MixSIAR/blob/master/inst/mixsiar_manual_small.pdf

mixsiar_gui calls most of the other MixSIAR functions:

Value

mixsiar_gui itself returns nothing, but using the GUI createsR objects that you can access from the console:

  • mixsiar$mix: mixture data, output of load_mix_data)

  • mixsiar$source: source data, output of load_source_data)

  • mixsiar$discr: discrimination (TDF) data, output of load_discr_data

  • mixsiar$jags.1: rjags model object with MCMC chains, output of run_model

See Also

load_mix_data loads the mixture data file,

load_source_data loads the source data file,

load_discr_data loads the TDF data file,

plot_data creates an isospace plot,

plot_prior plots your prior and the uninformative prior,

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write_JAGS_model creates a JAGS model file (.txt),

run_model sets up JAGS objects and calls JAGS to run the model,

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Mixsiar

Instruction Manual

output_JAGS processes the JAGS output (prints/saves diagnostics, summary statistics, and plots)

Aliases

Mixsiar Gui User Manual Version 1.0 Download

  • mixsiar_gui
Examples
Documentation reproduced from package MixSIAR, version 3.1.10, License: GPL-3

Community examples

API documentation